Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs8060967 chr16:67871501 C/T 2.75E-6 294 20.92 28.47 17.43 KM Plot
CESC rs8069062 chr17:35829306 C/T 2.53E-5 290 21.3 25.9 8.42 KM Plot
CESC rs853200 chr17:35804114 G/A 8.6E-5 290 21.3 25.37 8.43 KM Plot
CESC rs853222 chr17:35790022 G/T 8.6E-5 290 21.3 25.37 8.43 KM Plot
CESC rs853223 chr17:35791149 T/C 4.33E-5 291 21.4 23.78 8.45 KM Plot
CESC rs853224 chr17:35791328 A/T 8.6E-5 290 21.3 25.37 8.43 KM Plot
CESC rs899275 chr3:161042104 T/C 7.54E-5 295 28.18 20.85 19 KM Plot
CESC rs941539 chr14:93561215 A/G 7.18E-5 299 8.4 23.07 21.2 KM Plot
CESC rs9419035 chr10:135054173 G/A 1.9E-14 294 21.73 16.77 3.33 KM Plot
CESC rs9419036 chr10:135054181 G/A 1.9E-14 294 21.73 16.77 3.33 KM Plot
CESC rs9419037 chr10:135054523 G/A 1.89E-14 295 21.73 17.07 3.33 KM Plot
CESC rs9436757 chr1:66528892 C/T 1.98E-5 299 4.15 21.1 21.5 KM Plot
CESC rs958550 chr7:65635679 C/T 5.28E-6 299 7.57 21.97 21.2 KM Plot
CESC rs9644046 chr8:26909970 G/A 6.06E-5 292 15.7 21.2 26.53 KM Plot
CESC rs9787074 chr1:3382135 C/T 1.18E-6 288 21.68 19.53 3.33 KM Plot